1.- Trigueros, S., Arsuaga, J., Vazquez, M., Sumners, D.W., Roca, J. Novel display of knotted DNA molecules by two dimensional gel electrophoresis. Nucleic Acids Research 2001, 29 (13): e67.
Cited: 3 times

2.- Arsuaga, J., Tan, R., Vazquez, M., Sumners, D. W., and Harvey, S. C. Investigation of Viral DNA Packaging Using Molecular Mechanics Models. Biophysical Chemistry 2002, 101-102(1): 475-484.
Cited: 27 times

3.- Arsuaga, J., Vazquez, M., Trigueros, S., Sumners, D. W., and Roca, J. Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids. Proceedings of the National Academy of Science USA 2002, 99(8):5373-5377. [Evaluated by Prof. T. Schlick in Faculty of 1000]
Cited: 24 times

4.- Sachs, R. K., Arsuaga, J., Vazquez, M., Hahnfeldt, P., and Hlatky, L. Using graph theory to analyze chromosome aberrations. Radiation Research 2002, 158 (5): 556-567
Cited: 3 times

5.- Cornforth, M. N., Greulich-Bode, K. M., Loucas, B. D., Arsuaga, J., Vazquez, M., Daye, J., Sachs, R. K., Bruckner,M., Molls, M., Hahnfeldt, P., Hlatky, L., Brenner, D. J. Chromosomes are predominantly located randomly with respect to each other in interphase human cells. The Journal of Cell Biology 2002, 159 (2),237-244. [Evaluated by Prof. M. Matzke in Faculty of 1000]
Cited: 38 times

6.- Vazquez, M., Greulich-Bode, K. M., Arsuaga, J., Cornforth, M. N., Bruckner, M., Sachs, R. K., Hahnfeldt, P., Molls, M., Hlatky, L. Computer analysis of mFISH chromosome aberration data uncovers an excess of very complex metaphases. International Journal of Radiation Biology 2002, 78(12):1103-1115.
Cited: 5 times

7.- Arsuaga, J., Greulich-Bode, K., Vazquez, M., Brukner, M.,Hahnfeldt,P., Brenner, D.J., Sachs, R. and Hlatky, L. Chromosome positioning through radiogenic aberrations. International Journal of Radiation Biology 2004, 80 (7), 507-516.
Cited: 10 times

8.- Postow, L., Hardy, C., Arsuaga, J. and Cozzarelli, N. Topological domain structure of the Escherichia coli chromosome. Genes and Development. 2004 Jul 15;18(14):1766-79. [Evaluated by Prof. U. Schibler in Faculty of 1000]
Cited: 53 times

9.- Levy, D., Vazquez, M., Loucas, B. D., Cornforth, M. N., Sachs, R. K., Arsuaga, J. Comparing DNA damage-processing pathways by computer analysis of chromosome painting data. Journal of Computational Biology (2004), 11(4), 626-641.
Cited: 4 times

10.- Peter, B., Arsuaga, J., Breier, A., Khodursky, A., Brown, P., Cozzarelli, N. Genomic analysis of supercoiling sensitive genes in Escherichia coli: responses to topoisomerase inhibition. Genome Biology 2004 5 (11);R87. Highly Accessed Paper. [Evaluated by Prof. W. Hide in Faculty of 1000]
Cited: 30 times

11.- Vives, S., Loucas, B., Vazquez, M., Brenner, D.J., Sachs, R.K., Hlatky, L., Cornforth, M., and Arsuaga, J. SCHIP: statistics for chromosome interphase positioning based on interchange data. Bioinformatics. 2005 Jul 15;21(14):3181-2.

12.- Arsuaga, J., Vazquez, M., McGuirk*, P., Trigueros, S., Sumners, de W., and Roca, J. DNA knots reveal a chiral organization of DNA in phage capsids. Proceedings National Academy of Sciences U S A. 2005 Jun 28;102(26):9165-9.[Evaluated by Prof. J. Cascarrosa in Faculty of 1000]
Cited: 8 times

13.- Hua*,X., Baghavan*,B., Nguyen*,D., Arsuaga,J. and M. Vazquez Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases. Topology and its Applications (2007) 154; 1381-1397.
Cited: 2 times

14.- Ardanza-Trevijano, S. Arsuaga, J. , Crespo J. A., Extremiana, J. I., Hernandez, L.J., Rivas, M. T. , Roca, J., Vazquez, M. La topologia como herramienta en otros campos. La Gaceta de la Real Sociedad Matematica Espanola (2007) 10.3; 611-632.

15.- Blackstone, T.*, McGuirck, P.*,Laing, C., Vazquez, M., Roca, J. and Arsuaga, J. The role of wr ithe in DNA knotting. Proceedings of International Workshop on Knot Theory for Scientific Objects (2007). OCAMI Studies Volume 1 (2) Osaka Municipal Universities Press; 239-250

16.- Arsuaga, J., Blackstone, T.*, Diao,Y., Karadayi, E. , Saito, Y. Linking of Uniform Random Polygons in Confined Spaces. J. Phys. A: Math. Gen. (2007) 40; 1925-1936

17.- Climent, J., Mao, J., Garcia, J. L., Arsuaga, J., Perez-Losada, J. Characterization of Breast Cancer by Array CGH. Biochemistry and Cell Biology (2007) 85(4); 497-508

18.- Arsuaga, J., Blackstone, T.*, Diao,Y., Karadayi, E. , Saito, Y. Knotting of Uniform Random Polygons in Confined Spaces. J. Phys. A: Math Gen. (2007) 40; 11697-11711

19.- Arsuaga, J. and Diao Y. DNA knotting in Spooling like conformations in Bacteriophages. Journal Computational and Mathematical Methods in Medicine (2008) 9 (3-4) 303-316

20.- Dewoskin, D., Climent, J., Cruz-White, I., Vazquez, M., Park, C.,Arsuaga, J. Using computational homology for prediction of breast cancer response to chemotherapy. Submitted to Top. and Its Applications

21.- Arsuaga, J. , Diao, Y. and Vazquez, M. DNA topology in recombination and chromosome organization. Book Chapter, special issue of the IMA. (submitted)

Faculty of 1000 of Biology is a new online research tool that highlights the most interesting papers in biology, based on the recommendations of over 1000 leading scientists.

The number of citations of each paper was obtained from the ISI Web of Knowledge and Google scholar.
My H-index (i.e. the number H of papers that has been cited more than H times) is: 7

Coming Soon:

22.- Arsuaga, J., Blackstone, T. and Diao Y., Varela, R. Linking of partially overlapping polygons in confined volumes. To be submitted to J. Phys A.
23.- Arsuaga, J., Roca, J. and Sumners, D. W. DNA knots and chromosome organization in bacteriophages. Book chapter in the book "Emerging Topics in Physical Virology" to be published by Imperial College Press (to be submitted by 10/15/08).
24.- Vives, S., Loucas, B., Vazquez, M., Sachs R. K., Cornforth, M. N. and Arsuaga, J. Comparative study of Spatial Chromosome Clustering in human lymphocytes and fibroblasts
25.- Arsuaga, J. , Y. Diao, A. Dobay and Varela. A new algorithm for generating random polygons.
*Undergraduate Students