1.- Trigueros, S., Arsuaga, J., Vazquez, M., Sumners, D.W., Roca, J. Novel display of knotted DNA molecules by two dimensional gel electrophoresis. Nucleic Acids Research 2001, 29 (13): e67.
2.- Arsuaga, J., Tan, R., Vazquez, M., Sumners, D. W., and Harvey, S. C. Investigation of Viral DNA Packaging Using Molecular Mechanics Models. Biophysical Chemistry 2002, 101-102(1): 475-484.
3.- Arsuaga, J., Vazquez, M., Trigueros, S., Sumners, D. W., and Roca, J. Knotting probability of DNA molecules confined in restricted volumes: DNA knotting in phage capsids. Proceedings of the National Academy of Science USA 2002, 99(8):5373-5377. [Evaluated by Prof. T. Schlick in Faculty of 1000]
4.- Arsuaga, J., Vazquez, M., McGuirk*, P., Trigueros, S., Sumners, de W., and Roca, J. DNA knots reveal a chiral organization of DNA in phage capsids. Proceedings National Academy of Sciences U S A. 2005 Jun 28;102(26):9165-9.[Evaluated by Prof. J. Cascarrosa in Faculty of 1000]
Cited: 30 times

5.- Hua*,X., Baghavan*,B., Nguyen*,D., Arsuaga,J. and M. Vazquez Random state transitions of knots: a first step towards modeling unknotting by type II topoisomerases. Topology and its Applications (2007) 154; 1381-1397.
Cited: 4 times

6.- Ardanza-Trevijano, S. Arsuaga, J. , Crespo J. A., Extremiana, J. I., Hernandez, L.J., Rivas, M. T. , Roca, J., Vazquez, M. La topologia como herramienta en otros campos. La Gaceta de la Real Sociedad Matematica Espanola (2007) 10.3; 611-632.

7.- Blackstone, T.*, McGuirck, P.*,Laing, C., Vazquez, M., Roca, J. and Arsuaga, J. The role of wr ithe in DNA knotting. Proceedings of International Workshop on Knot Theory for Scientific Objects (2007). OCAMI Studies Volume 1 (2) Osaka Municipal Universities Press; 239-250

8.- Arsuaga, J., Blackstone, T.*, Diao,Y., Karadayi, E. , Saito, Y. Sampling Large Random knots in Confined Spaces. J. Phys. A: Math Gen. (2007) 40; 11697-11711

Cited: 3 times

9.- Arsuaga, J. and Diao Y. DNA knotting in Spooling like conformations in Bacteriophages. Journal Computational and Mathematical Methods in Medicine (2008) 9 (3-4) 303-316
10.- Arsuaga, J. , Diao, Y. and Vazquez, M. DNA topology in recombination and chromosome organization. (Book Chapter) To be included in the volume, Mathematics of DNA Structure, Function and Interactions (eds C.J. Benham, S. Harvey, W.K. Olson, D.W. Sumners and D. Swigon), Springer Science + Business Media, LLC, New York, (2009) special issue of the IMA.

11.- Varela, R., Hinson, K., Arsuaga, J. and Diao, Y. A Fast ergodic algorithm for generating ensembles of random polygons J. Phys A: Math Gen (2009) 42 (9) 095204

12.- Arsuaga, J. , Borgo*, B., Diao, Y. and Scharein, R. The Average Crossing Number of Equilateral Random Polygons in Confined Volumes. J. Phys. A: Math. Theor. 42 (2009) 465202.

13.- Scharein,R., Ishihara,K., Arsuaga,J. , Shimokawa, K., Vazquez, M. Bounds for minimal step number of knots in the simple cubic lattice. J. Phys A: Math. and Theor (2009) 42 (47)475006-457030

14.- Arsuaga, J., Roca, J. and Sumners, D. W. DNA knots and chromosome organization in bacteriophages. (Book chapter) in "Emerging Topics in Physical Virology" Imperial College Press. (2010) Ed: P. Stockley and R. Twarock. pp: 255-288.

15. Scharein,R., Ishihara,K., Arsuaga,J. , Shimokawa, K., Vazquez, M. Bounds for minimal step number of knots in confined regions of the simple cubic lattice. (Submitted to J. Phys A)