1.- Packaging double-helical DNA into viral capsids
LaMarque et al. (2004) Bioploymers 73(3) 348-355
2.- Statics and dynamics of condensed DNA within phages and globules
Odijk (2004) philosophical transactions of the Royal Society A: Mathematical, physical and engineering sciences. 362(1820) 1497-1517
3.-Simulations of Action of DNA Topoisomerases to Investigate Boundaries and Shapes of Spaces of Knots
Flammini et al. (2004) Biophys J. 87:2968-2975 (2004)
4.- Nonuniform Donnan Equilibrium within Bacteriophages Packed with Dna
Odijk et al. (2003) JOURNAL OF PHYSICAL CHEMISTRY B 107 (32): 8074-8077
5.- Twist-bend instability for toroidal DNA condensates
Kulic et al (2004) Europhysics Letters C 418-424
6.- Intricate Knots in Proteins: Function and Evolution
Virnau et al. (2006) PLoS Comp. Biol. 2 (9): 1074-1079 7.- Helical packaging of semiflexible polymers in bacteriophages
Metzler et al. (2004) EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS 33 (6): 497-505
8.- Monte Carlo simulations of polyelectrolytes inside viral capsids
Angelescu et al. (2006) Physical Review E. 73 (4): Art. No. 041921
9.- Numerical Simulation of Gel Electrophoresis of DNA Knots in Weak and Strong Electric Fields
Weber et al. (2006) Biophysical Journal, 90 (9): 3100-3105
10.- Simulations of electrophoretic collisions of DNA knots with gel obstacles
Weber et al. (2006) . Phys.: Condens. Matter 18 (14): S161-S171
11.- On the perfect hexagonal packing of rods
Starostin (2006) Phys.: Condens. Matter 18 (14): S187-S204
12.- Protein knot server: detection of knots in protein structures
Kolesov (2007) Nucleic Acids Research
13.- Diffusion mechanisms of localised knots along a polymer
Metzler (2006) Europhys. Lett
14.-Fractal Dimension and Localization of DNA Knots
Ercolini et al. (2006) PHYSICAL REVIEW LETTERS 98 (5): Art. No. 058102
15.- Externally steered relaxation of tight polyethylene tangles with different initial knot topologies
Arteca (2007) Theoretical Chemistry Accounts: Theory, Computation, and … - Springer
16.- Single DNA conformations and biological function
Metzler et al. (2006) JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE 4 (1): 1-49
17.- Hin-mediated DNA knotting and recombining promote replicon dysfunction and mutation
Deibler et al. (2007) BMC. Mol. Biol. 8: Art. No. 44
18.- Ranking knots of random, globular polymer rings
Baiesi M, Orlandini E, Stella AL (2007) PHYSICAL REVIEW LETTERS 99 (5): Art. No. 058301
19.-Statistical topology of closed curves: Some applications in polymer physic
Orlandini E, Whittington SG (2007) REVIEWS OF MODERN PHYSICS 79 (2): 611-642
20.- Knotting of random ring polymers in confined spaces
Micheletti C, Marenduzzo D, Orlandini E, et al. (2006) JOURNAL OF CHEMICAL PHYSICS 124 (6): Art. No. 064903
21.- Knots in globule and Coll phases of a model polyethylene
Virnau P, Kantor Y, Kardar M (2005) JOURNAL OF THE AMERICAN CHEMICAL SOCIETY 127 (43): 15102-15106
22.- How knotting regulates the reversible intrachain reaction
Sheng YJ, Wu CN, Lai PY, et al.(2005) MACROMOLECULES 38 (7): 2959-2965
23.- Linear random knots and their scaling behavior
Millett K, Dobay A, Stasiak A (2005) MACROMOLECULES 38 (2): 601-606
24.- Monte Carlo simulation of the assembly of bis-biotinylated DNA and streptavidin
Richter J, Adler M, Niemeyer CM (2003) CHEMPHYSCHEM 4 (1): 79-83